Please check your settings using the following checklist:
You will need to link the Domain with Google Analytics in every case (this ensures you actually have access to the domain)
You will need to open the domain in Google Webmaster Tools and add the user "email@example.com" as a "Restricted User"
Once you've done Step 1. and 2., you should see the domain in the ""Webmaster Tools Profile"" list -> that's in the TrafficAnalysis Domain Settings Dialog.
If you have any issues linking the Google Analytics and Webmaster Tools accounts, please consider the following:
The Webmaster Tools Profile will show up automatically once the Google Analytics Profile is present. If your Google Analytics account is showing up in the Profile field in Domain Settings and the Webmaster Tools Profile still shows no linked account then the problem must be the linkage between the two Google accounts. Please login to your Google Webmaster Tools account and confirm that the website is linked to your Webmaster Tools and your Google Analytics account. In Webmaster Tools, go to Settings and choose ""Google Analytics Property"" and confirm the website shows up on both sides of the screen. Also be sure that both links are identical, if one has www. and the other does not, it won't work.